NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187769_10050976

Scaffold Ga0187769_10050976


Overview

Basic Information
Taxon OID3300018086 Open in IMG/M
Scaffold IDGa0187769_10050976 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2874
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F015081Metagenome257Y
F071728Metagenome / Metatranscriptome122Y
F087856Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187769_100509761F071728N/AMNKPNRADVRQANVRVSGITFESVRLRHDLGSDDLDILIDDPQIGRFALTAAVPSLELLEEGSDWRQVTLDELKEILADDGELAEVAEEPQASETAERESFNRLVAEGEHNECRDCPFQRGHPVSPA
Ga0187769_100509762F015081AGGVHDYYSGEEEISVEDLIEEQRSLARSPNLIERVVGSLCIGAILKKQLMGLPSSAISQLMTDHISCRLNLLAPESVIVEIASKRLDEKYETSLVCPECRAQL
Ga0187769_100509763F004185GGAGGMPLQKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNHFTGRTSEGFNTTRDEHDKLVSINSADAGLLLGKRK
Ga0187769_100509765F087856GGCGGMSKLSRADYTEYLVGKTIKRVHWNNDEKRKCLTLEFADKTLCSFRFDLTVDEEAELSDFASGNPSRHRKLIPLPLVRLPIKPLL
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