NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187771_10204775

Scaffold Ga0187771_10204775


Overview

Basic Information
Taxon OID3300018088 Open in IMG/M
Scaffold IDGa0187771_10204775 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1638
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004381Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0187771_102047751F004381GAGVPVTPTWNVPVEVKVHDRVEPPDPVTLVGDSEQEVLLVVRPTTPAKPFTAETVMVDVPAAFTFTLMLVGPALIVKSCTTNVRVAE
Ga0187771_102047752F004381N/AVPVEVKVQDSVELPEPVRLVGESVHDVLLVVRLTTPANPLMAEAVIVEVPAAFTLTFTLVGLAAIVKSWTTNVRVTE
Ga0187771_102047753F004381AGGVPVTPTWNVPVEVNVHDSVEVPEPVRLVGDVVQDVLLVARLTTPAKPFIADTVIVEVPAALTFTLTLVGLAVIVKSWTPNVTVRG
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