NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187770_10020235

Scaffold Ga0187770_10020235


Overview

Basic Information
Taxon OID3300018090 Open in IMG/M
Scaffold IDGa0187770_10020235 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4499
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010342Metagenome / Metatranscriptome305Y
F054250Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0187770_100202353F010342AGGAGGMQRELGNGHSQVGTDDPAENPLFATLAQVEHDLNDVIGALALLGVKRCSQCKQFFRSADPGALFDCGQLVCYSCVPDWWSSESMGLGVEERERIEGKLASWLRKYHRAEVVKVTPGSAPDTTNTEFQIAAKCQECGGSGKLMEGERCRFCNGLGTVRIVVPR
Ga0187770_100202356F054250AGGAGGMPLDSLELRTSLQRVLVALILILVPLTVFGFYVALQADSQIRQMAGENIRYMTRSAAELTSEFIAVRLRDVSVIANNPSVVQAVGSANHQYERLSEDAVLGKVEAMEQKWNNSEGDALAKNILASDLARQLRRMRELNPGLLKVTVADASGATVAATDKPVHYFQTDRGYWAVLYSQGQGAIHVADLRYDEQNRLPYISIAYPILQESTGRFIGAVTA
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