NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181561_10052184

Scaffold Ga0181561_10052184


Overview

Basic Information
Taxon OID3300018410 Open in IMG/M
Scaffold IDGa0181561_10052184 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2521
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F024204Metagenome207N

Sequences

Protein IDFamilyRBSSequence
Ga0181561_100521841F008882N/AKPKINRQELELLNFFLAHTDDNPLINPKALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEL
Ga0181561_100521842F024204AGGGGGMNNYSYLEILEDGIEVCASCGGANINANRNIYDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKATLNKINKGEL
Ga0181561_100521846F004343GAGGMTQHKEMIEEAKRLLNSKRENIPSMSKDFGKDHWLLTYPCGKIVKTYEDKRKKDVIVQESYL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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