NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194135_10013772

Scaffold Ga0194135_10013772


Overview

Basic Information
Taxon OID3300018414 Open in IMG/M
Scaffold IDGa0194135_10013772 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from North America - Little Laurel Run_MetaG_LLRF_2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5200
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F036080Metagenome / Metatranscriptome170Y
F037052Metagenome168Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0194135_1001377212F012096AGGAMSTWLVAAMGLVYAVVAIDQFIKGGVGTGIMFLGYAIGNIGLILQVK
Ga0194135_100137723F058556AGGAVTTFIVEHLHNGHAMFDTVSGVEDIDLTMFKNIQTLWVCDTPEEILAVENELRRKHARPSEQT
Ga0194135_100137726F036080N/AMNTRIDLESAIMTAWQTADDIDLLFKHYGDNPTPMSEDDVLNALLGIKVLHEMRMEALMDTYCQKFELNQYCTDPDKLAAREQFGLPINKKGKKK
Ga0194135_100137729F037052N/AMATKKPTKYVFKPEMCDRIIEMGKEGASQKMMFSEIGINKGVADTWKKNYPEFADALDTAVTNSQAYWEREILANVNNKGFNSRLAEIALRGQFQADYRETRDIKLDAKVETKVDFAKEIADLIAALKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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