Scaffold Ga0194135_10067269

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194135_10067269

Scaffold Ga0194135_10067269

Overview

Basic Information
Taxon OID	3300018414 Open in IMG/M
Scaffold ID	Ga0194135_10067269 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from North America - Little Laurel Run_MetaG_LLRF_2013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2395
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Collembola → Entomobryomorpha → Entomobryoidea → Orchesellidae → Orchesellinae → Orchesella → Orchesella cincta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058567	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194135_100672691	F058567	N/A	MRSAVVAILALVIVGAIALPFPQNFDEAVKQAQQMSLIPAGAQIDRTFSGNQVAYFQLGRNDRVNNGDLRQALSGVPAEIIANLEAQIANAN

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