NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181559_10641676

Scaffold Ga0181559_10641676


Overview

Basic Information
Taxon OID3300018415 Open in IMG/M
Scaffold IDGa0181559_10641676 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)571
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F066824Metagenome / Metatranscriptome126N
F084306Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0181559_106416761F002594N/AMAKIPLSRLNTAPKEYNETDFDQLIEDLQDMIKILNSTYPKDITDDQDRKTWFFMRGN
Ga0181559_106416762F084306GGAGGMSHLEQKLSQKRNLEAQWASKFIANGAVTIEMVQIQKKINEVAQEIKEDSERKD
Ga0181559_106416763F066824N/ARCGYMAEGLVNSDNLDAASDRLWKEHPSTFKWVDIEGPDNENRLTVEEWNEPSGTKTEPEAEPRGTMGL
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