NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10089139

Scaffold Ga0181553_10089139


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10089139 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1929
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009001Metagenome324Y
F012863Metagenome276Y
F017633Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0181553_100891391F017633N/AMTDNLTDPDFLDMNDLDNDHIRALIEHYLSVREKMPDNLAVRDRIEELQAELINRTLKADAESEANNRSSTIEGVIRQSTDNPL
Ga0181553_100891393F009001GGAGMSVTIYLTDHNGRKVAFFYRIDSERYLTCPQLIWACRQHPEYQGTAESKEHFIEQAKDVMRELNRSLPVRTCDVCDKSLQGMEREGTTCNDHNFDR
Ga0181553_100891396F012863N/ALYTRLARTLLIKQPINTNNTKNTTTTTMKNYKEYIDYCQRLAEDVNNSYSDDIEVTERMHEIADGCQYVIYYSKAWDLVNMMREYNHELFMQAVEEVQDNGFEHELAGDVNKLMTWIAFFLIRNGIHSAYQHIESEAVA
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