NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10117798

Scaffold Ga0181553_10117798


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10117798 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1618
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010532Metagenome302N
F010878Metagenome / Metatranscriptome298Y
F032867Metagenome / Metatranscriptome179Y
F046985Metagenome150N
F067760Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181553_101177983F067760N/AMKIRRIDMYIMNQYKNYCDEALRYKEFQKTFQSWKDDNIIELVKEYKNYRRLDRYGSKI
Ga0181553_101177984F010532AGGAGMNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMKVSEIDIIHRIEEHMSYMVSSYLTKSYEGISMDEQALRQA
Ga0181553_101177985F046985AGGAGGMSDLLELYNESWSEEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHSRGIADWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVILKEYPFDRGYQQQADKIWNNILQHLSEFNPEDAEELRNKLFKRRVAXTEHYTKN
Ga0181553_101177986F010878GAGGMKIKAWNIGIVWEDGTEENIGDIPDWVANRVDEFLNELEEEYEXVIY
Ga0181553_101177987F032867AGGAGMDELEKMIDDLIDKHDRRQHLIGTEADESEYLADISEDDDEN
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