NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10173500

Scaffold Ga0181553_10173500


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10173500 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1265
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008235Metagenome / Metatranscriptome336N
F016959Metagenome / Metatranscriptome243N
F045698Metagenome / Metatranscriptome152N
F059897Metagenome / Metatranscriptome133N
F079785Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181553_101735001F016959N/ASKRILQSVKHKWPTLKARLQHQLKDELTALHQLKSVLPLSKQAQKLYDKLSKKSIQEKD
Ga0181553_101735002F008235N/AMINYLKNLFKKKTEPETTPVEKPKNKYYLAKYRSNVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKTYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFINAKIIIKDNDQYESTH
Ga0181553_101735003F045698N/AMTNMNLPTKQPDVIELTKSIRETYYQLQLDYQALMLKATTLQAENEELKERLAKIAEKIQLG
Ga0181553_101735004F059897AGGMRLYSKNNKEDLFDRFEIDIHFPIFKWGTKPGNEWVNDFPTKYIDIKFDTQLVYRKDVTWTYFDLLFLGFGFTIIKQNSY
Ga0181553_101735005F079785N/AMKYRIWSKNAQCYTHEPCYPGSSLHCASNYYLDNDGNIVDFVTTIGSNQDDASKCDVDQEAYKIELCT
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