NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181563_10025136

Scaffold Ga0181563_10025136


Overview

Basic Information
Taxon OID3300018420 Open in IMG/M
Scaffold IDGa0181563_10025136 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4564
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F006240Metagenome / Metatranscriptome378Y
F060337Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181563_100251363F060337N/AMYVDYNEVIIILPKPPSLNKWYSGKHWSIRKSQKEKYTKHIKEQLDTIDPFCMDRFAIDVTYNCRYDVDNAITCAKFLADYLRAEGYVEDDNPKFFTSQSTTYNPELKKDEFRAKIKCYGYKSRE
Ga0181563_100251366F006240N/AMSYLDNKEHKKIIDCVLEQNAKLFQNLGEDCSKAEYEKAKLEERRKLRRIMDLDPEKIGRLIKDSLDD
Ga0181563_100251368F005010N/AMIRKRKHIREIQKYLEMLMMDQVNLSIYASRFGWSDEIQHQLSNSALLIRKYERRLRLIK
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