NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181563_10237251

Scaffold Ga0181563_10237251


Overview

Basic Information
Taxon OID3300018420 Open in IMG/M
Scaffold IDGa0181563_10237251 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F024204Metagenome207N

Sequences

Protein IDFamilyRBSSequence
Ga0181563_102372512F013295AGGAGMKINNLTPKQFARREIIKYLRDLFDNPQKYIQGFDDLTHRQQEEILRFVSLDEHRIDKLLNLPMGESXAQLVKIST
Ga0181563_102372514F024204AGGGGGMNNYSYLEILEDGIEVCASCGGANINANRNIYDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINKGELXY
Ga0181563_102372515F008882N/ANMSIKRYNFNKPKINRQELELLNFFLAHTDDNPLINPKALELFKANGYSAKNYQDLVNKVKTILKTYKTKGELXIITHT
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