NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181592_10179618

Scaffold Ga0181592_10179618


Overview

Basic Information
Taxon OID3300018421 Open in IMG/M
Scaffold IDGa0181592_10179618 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1596
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031118Metagenome / Metatranscriptome183N
F081369Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0181592_101796181F031118N/ARCEALAEILAEAEKLKMYRLDGSTYCEKCHNLVVRIQSVLEDVKIEDLSADDIEKIKAIKEKVIREEVFAESSSILRNPKEWLGTLNE
Ga0181592_101796182F081369N/AMNNGGFGAIWLDEAPMLFIIFALVVLNIIFLYVAWLQNRQRRKVERDLLAVQTFGSASPFAAKRPLDTEKNRLPKETLKTIADDVSLLKIDKAIAMLKIGSPLEEIRTDLDIETSYLKILASHHTK
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