NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10158476

Scaffold Ga0190265_10158476


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10158476 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000288Metagenome / Metatranscriptome1369Y
F045082Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_101584762F045082GGAVNWLIWTPLIVLGTLLVLFGLLLLLGRVAGGRYLRPIVVGLSKVPFLKGLFARMSNAALERENPELASAMRKLQRFGTPTTPEAAQRALARLTPGERRAYLQAAGEQADAPEPPNRAARRKLTAVQPPPGPARRGTSARKKRKR
Ga0190265_101584763F000288AGGAGGMALARVVSFDGVSSDRMAEMQREMEGSERPADVPAKEIVVLHDPDSEKSLVVVFFENEDDYRRGDEALSAMPTGDTPGKRTSVAKYEVAFRMTD
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