NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190265_10249253

Scaffold Ga0190265_10249253


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10249253 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1822
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053880Metagenome140N
F066815Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_102492531F053880N/ASSQALRTKLEAHFATFERKQQDADPAAFIRDRVAHQQWSDLYFAAQLAMDEKTPLKGLDAFGLVAKPGGKYSVDLSAFPQWEPLDSRLHKLTNEEVVESYVPALKARGFRDEDLDALRTYLANNDPRVTVQTEGRQLVETFARRLQGQRKAGQKLNLQEVLAYRYQKWMVRAEAQRSWAVGLMDALDKQRQRALVSFLDEGFQSEMTFGVATEPLDRTLEQEALPIVSGEFAEIITSEEAQLRQRMQRRAEKLMEGEPR
Ga0190265_102492532F066815AGGAGMNTCMRALAALGLMLLSGHAAAVATLKSVVPTFHQSASGSTLNAGLAVEASTSLPVLIIAGGFTITCTSSTLPQTAERRATFTGFMGISETLRIPQVIPSTYLIPGWSSIPMGSCGQCVMQYKGEAKDETSLSVRVGNQGVGVNFTLIPAGEQLVGDVRLIDICRSRQRQCCTPLCAIP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.