NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_11780639

Scaffold Ga0190265_11780639


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_11780639 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001384Metagenome / Metatranscriptome709Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_117806391F001384AGGAGGMADIRGVGKKITYSEDNPLSAELEEFRKKRDNVKREPKDDEERERLARWLAHRGRDELETTVGTACYASSHFEMDSEWRYFLADHIGTEAGHGWGYIRQANAIDPRRDHARPDPEFERQYGLTPRVEHHQIMKRDFLSYIFSGNLWPYGHVTAVSIQSIQITTPKLLDFEERVVHAEERSHHDAILQKIHDYVWELIEAYDEGPIRRRIAEIDAQALNSRPRTVFDPPRRE
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