NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181593_10130650

Scaffold Ga0181593_10130650


Overview

Basic Information
Taxon OID3300018423 Open in IMG/M
Scaffold IDGa0181593_10130650 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2034
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033824Metagenome / Metatranscriptome176Y
F045787Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0181593_101306502F045787GGAGMQKLLIKLLDMMSIKPGDAVVIEAVDNFLWRIDLPLGKISANTYEGKHWGDSKILDTDAWLTFTVGNLYAENEFSFGEGVVNINYADDNEGLAYTGELEDIITARIKDLYNLSADGSEQGMQGDDYISLDIWMDGLCDNNEDEFTPEQMDADFDDSQSENYLKQFCRFENYPGVTNGDLHSAVLQKST
Ga0181593_101306503F033824GGAGMKNTTQTIQTNLYSTPTISVPNSFTALHIAHIAWNLYSVNAPTTYSNEFSIDESSDFAHYNIQDSMDIAQHFYDCAFAIGSNVQQNVDYSIQDAFNMCDEFYGDTVVRESVSTQLVNNILAHINCGEYAKYTDYIVQDYTALVEATAQQLPSQIAQLEKQLAQLKAKQTA
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