NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181566_10259118

Scaffold Ga0181566_10259118


Overview

Basic Information
Taxon OID3300018426 Open in IMG/M
Scaffold IDGa0181566_10259118 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1269
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015099Metagenome / Metatranscriptome257N
F036971Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0181566_102591182F015099GGAGGMSHPSKNWQVIYRHQDSLAGCFVWAPSEAQAEKKFKARKEFEYDPEFDRDPEEGNIRSIYEYVAPQSNVAKKTKMDELEAFVKFPQFYPFLKKYHSGDEKSLAKQIPLTPDNIAIIDGIAKVIPIIRRYRGPRVRGGYMRECHKQDAERVSIYAR
Ga0181566_102591185F036971N/AMYAVGDEFAFDFVPEDREAPVFVEPYSEEIYSGKEIMDPTETDDKGIWSEFAEEEMFNNMPDEVDTLLNLEAESKRGK
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