NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181568_10062396

Scaffold Ga0181568_10062396


Overview

Basic Information
Taxon OID3300018428 Open in IMG/M
Scaffold IDGa0181568_10062396 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3152
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025616Metagenome / Metatranscriptome201Y
F090464Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181568_100623961F025616N/APKISVPLIYTETNYRIDHREKTVLTFGGWEYDNEFDFDSYRLKRERPWGVSLGWDNDGNVGYATGTVSLMGYADVSYMRITGVEDSGTKDQEGYSIGGSLHRFGVPMLWGVELWDDKNTGAYTKDDRLDYGVMYNVTDSTYVTAHRTENDDLGYDITAYGIVHNIVQNYDPSKRPDKQDGLELGLYLHDKEQRSTFTGAHTDHGQNILASVRYKF
Ga0181568_100623965F090464GAGGMAILSNTNPNRPQRGKRSVRLSGEASPQGIPLYAGTVVLIANGSGTAFTLANGEE
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