Scaffold Ga0181568_10170930

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181568_10170930

Scaffold Ga0181568_10170930

Overview

Basic Information
Taxon OID	3300018428 Open in IMG/M
Scaffold ID	Ga0181568_10170930 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1807
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045084	Metagenome	153	N
F054164	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181568_101709304	F045084	AGG	MKETFAAWKRFLNEEKMSDLGTGGAYVAKVNGLKVVIDLDDLDLEATKHSKERQFRHDRKISNQAIVDAVEMALGKIINDYANGELGNEEAFHIKAVSKGKAPDLNVIGVLQMQKGPDTLKVITVMRKDDFQTDNFGGGKQKTYTVNPR
Ga0181568_101709306	F054164	N/A	WNKDPIFINVNTARSLYGLTFPRSTKGPQRKKMVIEAVIDKEKTDFQYEMARGGKNYKKGTDDRADAIVIARAGEFLRRNENNKGYLVEKIVLQE

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