NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190272_10033326

Scaffold Ga0190272_10033326


Overview

Basic Information
Taxon OID3300018429 Open in IMG/M
Scaffold IDGa0190272_10033326 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064866Metagenome / Metatranscriptome128Y
F101365Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0190272_100333263F101365N/ALELPDFFKIFTEPKNTNLNQRTTMYLNKHLIYWINRYPKTMDLDLEDLIEALQYKLPGMDLEGTKFRGGFEIFIPIEGVTYTNDDGLMRQHYFIITVDSFKNAIRIYIYKEERLNAGFAQIRIPFCSIIDAIKEYVKEHRSVDQLLSKIIS
Ga0190272_100333264F064866N/AMKTPYFIFLLSACSMVFPFVSPAQKSDSQSLAKYSYPIFAVTGSQQYTGTAFFYRSGDTTFLVSNYHAIKGMSPLKQVINFTADTLFLKYPVKNSYEFKIMAIDISEEITGETEIFSMVDRIDLLKVPVEAPEDADILFINDLIDEDYLHDEPEEVVVFGYPTKPGSIPAFFSRQQRMEGKINPDGFTDYDASLKQNFPGASDSTRAILRGTARYYYFIKPYAPQGYSGAPVFGKFRNENDQPIYRFIGVIFAGQPGTRQTWAIKGSVALQYLQGEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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