NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190272_11436619

Scaffold Ga0190272_11436619


Overview

Basic Information
Taxon OID3300018429 Open in IMG/M
Scaffold IDGa0190272_11436619 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059136Metagenome134Y
F099519Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0190272_114366191F099519N/AIGLYRLEKWRFSLRYYLERPVTRLHHAGDVHDFFTKSERGYVLMNDEEFARLRSEGMNLRAVSERPAVTGTTGRGLRRQKWGALVVATLDDTPRTTPPAVK
Ga0190272_114366192F059136GAGMRHTALALAIVALGWVGVSGAERVWQTGIWRDVTVERPRVLFSVQSRDPNSNLPRTAPAREVRTYVIETDTLRLELRQDATVDTPTIDVLIGQPVTFALEKKTLYVKDQDGKEHRLSVRKQTVLTPS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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