Basic Information | |
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Taxon OID | 3300018431 Open in IMG/M |
Scaffold ID | Ga0066655_10000123 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22126 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (74.07%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002063 | Metagenome / Metatranscriptome | 597 | Y |
F003702 | Metagenome / Metatranscriptome | 473 | Y |
F003732 | Metagenome / Metatranscriptome | 471 | Y |
F097955 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066655_100001231 | F097955 | N/A | DCAASQWFDRLYFGGRPGHNVPNRIATRGLNMTENPVRSLAVFARGSSQFFLFCCATCLLVGCSVRKRPEIPWATAVMVRPVAQARIAEGNDAFDDPLPELRFEMPPFLGRLIGLRPPPPRPRSSAPSNGTLGSEAEKSDAPTIAPQLTPQESVVAQQQTNESLNIAERNLGAARGKTLSAAQTDLVSKIRGFIKDAREAAQITDWSRARSLAKKAQVLSEELASSL |
Ga0066655_1000012312 | F003732 | GGGGG | MSKKEKVLFVWFLVVATVSLVFHHFWACTVYALGRAVALNFVILPGLAKFAAGIWTAHLL |
Ga0066655_1000012320 | F002063 | GGAGG | MIAMLELTILALITIFAVAVAAGLHWLFLKVAFLMMQPATAPRIPARTQLARGTKQLARAFASQR |
Ga0066655_1000012326 | F003702 | AGGAG | MKRHVLSVVMSSAAAVISGTVFVVALFDQYALVEMAASIVTALQAYFVSSAIGDLLEEKKETNRTRNSVAVLMTIFLVAFYSFREYFH |
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