NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10000123

Scaffold Ga0066655_10000123


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10000123 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22126
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002063Metagenome / Metatranscriptome597Y
F003702Metagenome / Metatranscriptome473Y
F003732Metagenome / Metatranscriptome471Y
F097955Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100001231F097955N/ADCAASQWFDRLYFGGRPGHNVPNRIATRGLNMTENPVRSLAVFARGSSQFFLFCCATCLLVGCSVRKRPEIPWATAVMVRPVAQARIAEGNDAFDDPLPELRFEMPPFLGRLIGLRPPPPRPRSSAPSNGTLGSEAEKSDAPTIAPQLTPQESVVAQQQTNESLNIAERNLGAARGKTLSAAQTDLVSKIRGFIKDAREAAQITDWSRARSLAKKAQVLSEELASSL
Ga0066655_1000012312F003732GGGGGMSKKEKVLFVWFLVVATVSLVFHHFWACTVYALGRAVALNFVILPGLAKFAAGIWTAHLL
Ga0066655_1000012320F002063GGAGGMIAMLELTILALITIFAVAVAAGLHWLFLKVAFLMMQPATAPRIPARTQLARGTKQLARAFASQR
Ga0066655_1000012326F003702AGGAGMKRHVLSVVMSSAAAVISGTVFVVALFDQYALVEMAASIVTALQAYFVSSAIGDLLEEKKETNRTRNSVAVLMTIFLVAFYSFREYFH

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