NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10000362

Scaffold Ga0066655_10000362


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10000362 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14550
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016793Metagenome / Metatranscriptome244Y
F020149Metagenome225N
F074651Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_1000036210F074651N/AMPVSRTRGTKDSVKFMQVLDRAVYLRLKQLAHQRGVTVQELIRVLLIPDWLHGAEEKRLRAELDSRHRRATQKRLFRTSLQKPLVSTRKN
Ga0066655_1000036215F016793N/AVTSKARKNKPTRIEKILPLGKIIEFFRHRFHDPYLNPEAEVSFADFQAAFPEIPRADLEEGLSHWVMRPGAKVLSTKTTDFDGHELQVWYVHGLHEEHAELEDFVSRGALQV
Ga0066655_100003624F020149AGGAVGILTLALSATLSVVVSLIGIPIGFAYMYFFGGVVSTKAIKLYLFITKGTHVISSKTPELAAVQASRGLKLKLRRQIMYFGFILAVVVPFATYEAKHKDIPFFSPLARTTDIVNLITQDFITLTMTASLMLPLVALALPYFGGLRLRSIDVGPFHTTVLSMVVGASGGFALLYAALTQPILSVLGYIFFLLIGVCWCFALGCNLATDPANRHIARIVIAEKVSSRVVSSKIWLENPPGKFREV
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