NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10003093

Scaffold Ga0066655_10003093


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10003093 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6452
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024084Metagenome207N
F048886Metagenome147Y
F063566Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100030933F048886GGAMVVLGPVLVAAAASSCLLTILSGNVFACANVLPVFIGGGALFVAGIITCLVGVIVSEPNPRPRPPSGPMSAPQTGQVICKKCGRVNTFGLFSCPFCGQTSS
Ga0066655_100030935F024084AGGLPTAKKLMHLQETINEDLTKARLPEIRIDGFKLPDQALEITFERETVTGENKDRLWEIINAHYKKMLRDLELKE
Ga0066655_100030936F063566GGGGGLSSVPGFVKILVVVQAVVIVGLSGWIYNEYVNNQYLQLYLFGLFEGKGSLFAIIGLGGLVGTTLIGILLKAGNILGEIEHLSEKVGTGTDVKTMTNPKPTAMLVLKIARPEPRDEIGRLHGSMQRWKERSNYQE
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