NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10003148

Scaffold Ga0066655_10003148


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10003148 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6411
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001347Metagenome / Metatranscriptome718Y
F001765Metagenome / Metatranscriptome639Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100031482F001347GGALVLVGVLVGLWSGRTNPGAPSHPALLWISIALVAAFAALWIVLGKTVLIINDAGVRRESFLGQQELAWSQIAETRYCVTPVNLYAHFGLIGALVAMSSKSSRAQLTLQLISSEGKKLKVTSAFQKADEAIGIILSRILPPMVQNTKARLQRGETVAFGGIGLSATAVTWKKNSIPVSQITKAELVRSNLQIKQSGKWLAAINVRSDKVPNVLVFLEVLESVAPQVKSSGVDPLARVRL
Ga0066655_100031486F001765N/AMMKVMPYISEHLSSLRQEIADLRKLNAHFAEKTGHNEFDQTALELRTNRLREIKQELSKMLARPDDPSVWWERSRRSQIAE
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