Scaffold Ga0066655_10007814

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066655_10007814

Scaffold Ga0066655_10007814

Overview

Basic Information
Taxon OID	3300018431 Open in IMG/M
Scaffold ID	Ga0066655_10007814 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4490
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008460	Metagenome / Metatranscriptome	333	Y
F073310	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100078145	F008460	AGGAG	MATDDAEGLVAFQDVRVIRSTAPALLCRIGERSVWLPRGQLSGKLWCTGDRGTLFIRRWVARDRHLIDLRGAAVRSPAPSVARSRLPVQLHVVRRDREARHAN
Ga0066655_100078146	F073310	AGGAGG	MPFSQSFRRPSPARARGPVLAVGWRVYVARSQDGPARVPLTDYAGTNALATLADGNEVEILAWRPGGSGTRYRVRSAPDGLEGWLGVGNLRSARSAVSPAPTAPARPAAGSALPRAKQSEASGRRFGQRAH

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