NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10010124

Scaffold Ga0066655_10010124


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10010124 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4046
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012766Metagenome / Metatranscriptome277N
F027130Metagenome / Metatranscriptome195N
F097014Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100101241F097014N/AMHCDVMSRSCVRDITLMLGLRRRKTNDGGSDQNGDVARLFFDSFSKRVGIVEDGLKNMSTEVNKLKISMDRSQLSDLVLLERLQKAEVLVRESLNWTKEAAGIWRELREMPVTKEERSVVTSESSAGPPRVD
Ga0066655_100101244F012766GGAGGMEVLREEEVLQLEEELLRRLEEKLTPLVERAAVDAAKVAMHQLRLDLMSHLSRHEDTIRRLKRTESALNHIPTTR
Ga0066655_100101245F027130GGAGGVDVHRNCSLETREENRMLGKENSKENKLNEYFRRRCSNYERFLCDRVWECALCAQQVGKVETLELATVTKVEALRRR
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