NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10015591

Scaffold Ga0066655_10015591


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10015591 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3422
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030030Metagenome / Metatranscriptome186Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y
F088687Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100155912F046962N/ALEETADVGYPPETPSQTVPQDTITDDQLNGLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQDSPEEAASRRA
Ga0066655_100155913F042845AGGAGGMENRKWKAFLRMTGETTVDASEDILTEFKAMVEYLKWIGVDYSMVVQVEAGQTDPSRTLALEQSPRRREPGQLGD
Ga0066655_100155914F030030AGGAGMAKFIMSIGENAYDVLSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPPIYGGESRNSRTLVSPVARLRH
Ga0066655_100155915F088687GGAGMSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENEFRWDNPSLSLIASALRILTDQNNIIMKQNELILRELESRPTTVKSK
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