NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066655_10021438

Scaffold Ga0066655_10021438


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10021438 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3016
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002144Metagenome / Metatranscriptome590Y
F008765Metagenome / Metatranscriptome328Y
F017701Metagenome / Metatranscriptome239Y
F058041Metagenome / Metatranscriptome135Y
F088658Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100214382F002144AGGAMSHGWFGPCPHCQALLSYLEGAAGSQMNPPCPRCHKIVPVSRATFLMRDHSRPSAPKKPHTA
Ga0066655_100214384F058041AGGAGGMAFPSRPRRAPAPVPIRVPVFAVGRQVYVAGAGDRSARVTLMDDAGKKPLASLDDGTQVAILGWRPGWAGTARYRVRATGSGLEGWLGVGNLRYTEAAISSAPTAPPLPDVRPAPLRVGDLGGSGRRFGQPFE
Ga0066655_100214385F008765AGGAMATDAKQMTERERADEKVRAIVEELDRPTLALLYRTLHDALGFRIDTTDIAIGKLRG
Ga0066655_100214387F088658AGGAGMATADDADDLVRFRNVTVISSTGTALFCGVGGKSVWLPRRHISGRLRCMGDRGTLLIRRWVAHDRRLLRPPGTGVVSALGPSVSWRRLAAQLHLVRRDRETPLAN
Ga0066655_100214388F017701GGAMQYEDTIEIRGVTVVRQTDVALLCRMANQHRWIAPTQLQRGSTVARQGDVGIIVLKRPFAVEHGLVPFQGRHD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.