 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018431 Open in IMG/M |
| Scaffold ID | Ga0066655_10023685 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2900 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002975 | Metagenome / Metatranscriptome | 516 | Y |
| F005263 | Metagenome / Metatranscriptome | 406 | Y |
| F030030 | Metagenome / Metatranscriptome | 186 | Y |
| F042845 | Metagenome / Metatranscriptome | 157 | Y |
| F046962 | Metagenome / Metatranscriptome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066655_100236851 | F002975 | GGA | LIDPLLELKGLRFCEDCYPDVKREHAAASMSDKMDRRQRVAFADDSSDENLRGSIIKGKQALAVRENDFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK |
| Ga0066655_100236852 | F030030 | AGGAG | MAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPRQNGSNLIQSSIYGGDSRNSRMLVSPVARLRH |
| Ga0066655_100236853 | F042845 | AGG | MNGETTDDTSQDILTEFKAMVEYLKWIGVDYSMVVQVEAGQTERSQSLALEQTPRRRGSRQLGD |
| Ga0066655_100236854 | F046962 | N/A | MEEIANLGYPPETPSQTVPQDTMTDDQLKDLLAELISSSASLSVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNNLGEAASRGV |
| Ga0066655_100236857 | F005263 | N/A | RQIVHIRVNMILAELGKSYNNAILSVSQTLLLERRTRRTFTIDPDVSEKIDKLVGGHNLEVNVLVNKSIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVEDARKMGTQNGKDTVVEFILYYFRKFDLASVLKTFELIGAEYANAYAYTEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVTVELEESDDQLICKIGGARSLKIMAPKTFKEQLAKQAVERRVEP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |