NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10222056

Scaffold Ga0066655_10222056


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10222056 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1185
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006907Metagenome / Metatranscriptome362Y
F084195Metagenome / Metatranscriptome112N
F105763Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_102220561F006907N/ALEDGSDAGEVTYAVLVKVGGEILVGNGRRFRILDVVPFEEEDESPFVGLLQVEAA
Ga0066655_102220562F105763N/AVGSFVWHVREASFKGAELASAYRYHPFSVDEPHVGTDDVFLEGAGPWRVIDFRRTEVLKSDGNILAVERASAI
Ga0066655_102220563F084195GAGMSAEYDVARQQRLRRALEAIADAYGFTGELRTERIGEWWLYPNSIGYDREQEIAHQHGLEVKFSNEKIDEFRQLVAEAQRNGP
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