NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10257385

Scaffold Ga0066655_10257385


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10257385 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027893Metagenome193Y
F070171Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_102573851F027893N/AYLIRRLEQCVDEKPDEKVEAAADLLLESAQDRSAAERAMETLGSIRSAASARVLAYMISEPVLEEDLEMKAYTLVRAMWPLARPYIFYSLKPHAHEDIPFRWFQLLIECGEASTVDRILEEVLAHANHPDYREDLLVLMELLGQARDPETERKILQVLNSAETPHTARDILDGLLRRSKTPKYKETSSPEPWASLERLYAANKKYLAAAKLFDTGQRAAASRKLDELLREQPDYPFALMLKQLI
Ga0066655_102573852F070171N/AEFTPESAVRFLKESGFFDEYIIVGVKRGNGWRRSRCITTFEGRPSDAATILGHLAEYFGKEQQDDKPHDDRHM
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