NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10434149

Scaffold Ga0066655_10434149


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10434149 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)867
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064589Metagenome / Metatranscriptome128N
F074683Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_104341491F064589N/ALLGGLLLLQAFLDVSIFRALVENLNNFVVLEIGMVLVAFAAAVHIYRISSQAK
Ga0066655_104341492F074683AGGVIDKILQVSKRHLPVVGLLGLVVIAAAGGTVYYYQFLTPHQSTCGIPSHRLIFMTAEIQEVGGFKVYNTAFLNQTSLPGFNATYGPSLAGVNLKDYKPSLNDNKTISVNVGDEVTFYVKAVNASDSRQVSSSHGFQISGPATLAVVSGSLPAAGATIPFGTWFSVTIRFDTAGAYIYFCTVVCSAQHGSMNGNISVSCGTSV
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