NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190275_10011522

Scaffold Ga0190275_10011522


Overview

Basic Information
Taxon OID3300018432 Open in IMG/M
Scaffold IDGa0190275_10011522 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6576
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.2639Long. (o)-110.8632Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010385Metagenome304Y
F057149Metagenome136Y
F059713Metagenome133Y
F086692Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0190275_1001152210F057149N/AMSTCAGITREGRRCTLSAQTSSGMCWLHDPARADQRQRYASKAARSKGNKEVADLKEEIKNVIKDVKAGDLDRNDAGVMIQGYRALKDFIALERQVRETDELAAELEELKREYGAA
Ga0190275_100115222F010385GAGGMDTTESSAPAHPSTEDHDHQDERPHACNDGWVSIGQTVIDPHTGEEAEEFALYLCRRCADAK
Ga0190275_100115226F086692GAGGMSGSERIRCAACKKRIAASEPDIELRRLDDGRRRYYHTRCVAATFETVARAPDVWLMTVRHVKEMAN
Ga0190275_100115227F059713AGGAGMDVARSETVEAELDRLIVKQSSKEPDPDEREELWKESVRRYNARRREANRLAWCDYFSHLAGSLRARAEEYEGRAKRLMQDDQEIGEAS
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