NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190275_10055645

Scaffold Ga0190275_10055645


Overview

Basic Information
Taxon OID3300018432 Open in IMG/M
Scaffold IDGa0190275_10055645 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3325
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.2639Long. (o)-110.8632Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001245Metagenome / Metatranscriptome737Y
F006339Metagenome375Y
F019060Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0190275_100556453F019060GGAGGMQEEREERTKKMAEELSKLQQIHAHLAALEQMAASYPENHSTRLAIESLELYKARTVLEGDIVRLRGSLGYGTTGYGTL
Ga0190275_100556454F006339GGAGGMQNSQTIQDAKRLLAAMSTNHSEARMASPYGLDRPFSPSWADAEQAGLDRVRRDGAMWWLIENNLLERDEEAENLREKGKEVPDYNYLYGSVFRITEHGRELLEEIWEERRHQ
Ga0190275_100556455F001245AGGMSAKALGMLKHMRKQILGQPAPYVVVRGAAISIGVDPGGSECHALVDELLRGGHLQRYPSPSLTAHGLYRLTDSGISAADEADSPTPLR
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