NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190275_10063174

Scaffold Ga0190275_10063174


Overview

Basic Information
Taxon OID3300018432 Open in IMG/M
Scaffold IDGa0190275_10063174 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3145
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.2639Long. (o)-110.8632Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001245Metagenome / Metatranscriptome737Y
F016872Metagenome / Metatranscriptome244Y
F019060Metagenome / Metatranscriptome232Y
F020315Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0190275_100631743F019060GGAGGMGEKRQERTHKRAEELSKLQQIHAHLAAVEQMAASYPEDHSTRLVIESLELYKARTVVEEDIVRLRGSLGYGTEGYGTQ
Ga0190275_100631744F001245AGGAMSDKALGMLKHMRKQILGKPAPYVMVHGAAISIGVKPGGSECHVLVDELLQAGYLQRYPSPSLTAHGLYRLTDSGVAAADEAALIAARRRARIDEER
Ga0190275_100631746F016872AGGAGGMHDDQTAQDATRLLGAFSTNHAEARMVSPYGLDRPFYPSWADADQAGLNRVRRDAAIRWLVEKNMLEREGEPENPLGTGEGFYSKYGSVFRFTDAGRELLEEVRERRQA
Ga0190275_100631747F020315N/AAERWEEGFVDEKSLQLLKVMREQLGETAASRTVDAGAAAKSLGMYPGTLERSLLYLARAGYIEEYADRAMSSRDGMFLITLRGIAAIDNA
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