NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190275_10208416

Scaffold Ga0190275_10208416


Overview

Basic Information
Taxon OID3300018432 Open in IMG/M
Scaffold IDGa0190275_10208416 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1855
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.2639Long. (o)-110.8632Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004746Metagenome / Metatranscriptome425Y
F018130Metagenome / Metatranscriptome236Y
F023705Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0190275_102084162F023705GAGVNTAKGANFLESREARVGKSVGVLDGAKRTGKGRVGTIEQTYGHPDYLAMEVRFEDGSAELYWYYELRTMEGQPLA
Ga0190275_102084163F004746AGGAGGMQANEARRGTLVRVREGHWKGQFAGMRATVQNLWGQSEHVAVDVLLEDGRSELFWLPDLFVVDEDITV
Ga0190275_102084164F018130AGGAVAQEVEPNEHSADEQARCEIDKIHEAEGECPRPGEVQLDGIVLCVRHAELLGLENHSERMLGEVFKMDQWLESVDGQADESRVRRAEHHRNELVEQLRLNRANRTHPR
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