Scaffold Ga0066667

Basic Information
Taxon OID	3300018433 Open in IMG/M
Scaffold ID	Ga0066667_10000638 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018433 Open in IMG/M

Scaffold ID

Ga0066667_10000638 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12128
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12128

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005560	Metagenome / Metatranscriptome	396	N
F054748	Metagenome / Metatranscriptome	139	N
F062629	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_100006381	F062629	N/A	LFIASSLYYLEQGRILLAGGLGFLAGLARPEAFLVAIPFLLKGIFEDQKFRKLLAGFTVLASVPAFGVYAYTQTGNILAPFQSEATGPKCTILCFFNNPVYQVANGVLPYTINFVTMILAVIFVAIPLIRGNVSSKLFPYYTWAFVLLAVVFYSGEVRSFARFALVVPPVFWAQAEYSALHPRFFRGLIVVYSVLMCLATILWVNWYPML
Ga0066667_1000063810	F054748	GGA	MTTEETPRIDEPSKRLTEMILKGEDQESARIASEIVGGRSQTNDTVDAISETMNIVADLHEVERYTVQQVESCERAAESALNAIRPGLKVEQRRISGKVMVTSLHGDPHRFEKTLLLTMLEMGGFSALDGGEELSPEEVVRNVKNLKPDVLAIPLVTTSAVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLGILSRIAEILISR
Ga0066667_100006389	F005560	GAG	MPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKSAAIVITPFTIVLFTPYIVESSWFISAVASASNSIPSLKETAVNFYTWSFGLARMDYSVKFVVSQLSAAFSSTAVSGLLLWRVKGTRNLMLALRRKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066667_10000638

Overview

Ecosystem & Geography

Associated Families

Sequences