NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10000843

Scaffold Ga0066667_10000843


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10000843 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10936
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007642Metagenome347Y
F008127Metagenome338N
F015713Metagenome252N

Sequences

Protein IDFamilyRBSSequence
Ga0066667_1000084313F015713GAGVHAYEAEGWERDDPSMKISWHDVAEDVEKHAHKLAEDIFALEPDVTEEVDLRALFERILGKEDWTDKLAAQLGRFKGLFHRPQKETELPEDLKQLIPNMGDVERAYVEITSGYKDFIKAVWAAQHERQWRE
Ga0066667_100008435F007642N/ALTAREAVTVPEKPLAEVLIEGELSPFEHEALYRILRKRFQLEHPSYTEPVDEDLATRVNITFHYPYATTIFTDVLQENWRDLKELLRQIRYRRGKAGAAVTLSFVGEKNKLVFKSGILEEKELSSALDQIGHLTGILGQMLRPETMDKPLELVEAAYDKKSDRWPEFKGFTSTGRNESYVFDESVFRWIRL
Ga0066667_100008436F008127GAGLLNGKGYRTFSSCSGGHPANPRWKVNRHESGYLAFSPPSNVAFALYLGLRKKNSDFTVEAQAVIDDGDGGDRETICTRFYWQLSDRKKHKLEHYRKLFSQMSEIIEGLPRAPGNGNEVLTGLFGKENLQTGLRIVKGQMKRFTAN
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Biomedical Sciences Research Center "Alexander Fleming"
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