NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10009565

Scaffold Ga0066667_10009565


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10009565 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4573
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001899Metagenome620Y
F036188Metagenome / Metatranscriptome170Y
F048188Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0066667_100095652F001899GAGLAMTCGFRFEVRPEAEVVELEADHHTVHVCVDCLTLLTVHRRIHHMKVEKVIVEMAERRPVLAEA
Ga0066667_100095653F048188GAGLLNIVRRSMLLLTLALLGAWLTTFNAHATGPMFPDSSGVANCINPPTIAGNLTLTICTSKIHYSFGETVRFVGTLTNTGETPVQLSTMSSSAIVFDRVDSLVLREAGFDFCTPSTSCLIPAGQSLTVSIGNWFTDEPFFQAKLSGPYTAFAGLAACPTNGPCLAPDFLSLRIVVSVPQN
Ga0066667_100095654F036188GAGGLRQRDGEWLSSAKGPVIRRYRGKYVAIRNKKILADSTTMKGLYSKLDKLKPGMVLITRVEKPTLLVYVELR
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