NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10333857

Scaffold Ga0066667_10333857


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10333857 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1197
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F019913Metagenome / Metatranscriptome227Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066667_103338571F000280GAGGMPARPLAGYRDVGHDVRHSRRNHVRAWIILAFLVAIYLVWTLIVYFLEPGL
Ga0066667_103338572F090360N/AMAAAPPYVAYSSMSEAVAPASEWPYLYASLQAYKAHVQEYPGCQRMELFASVDDDGGMRIHCYTVWDTPGQLEGFLDLGYTFERLLADLDLAGVERSLVMEKLF
Ga0066667_103338573F019913AGGAGGMAMPRGDTPQKAEQFYNYLLAHHETEHPVKTWHVNSMALAWMWGFVAALSLILIWWIWQYRTTRQKTRIYSVDSWSGFTSELAGPATLFFILLTAILTGFAVALIVGHLVNGQIF
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