Scaffold Ga0066667_10400151

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066667_10400151

Scaffold Ga0066667_10400151

Overview

Basic Information
Taxon OID	3300018433 Open in IMG/M
Scaffold ID	Ga0066667_10400151 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1109
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002633	Metagenome / Metatranscriptome	541	Y
F055586	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_104001511	F055586	N/A	TVMSFRAAAYWYPNARRRFYLRGGAALVTHRTDDGTDVITSSGIGPQMGVGYEYPVGRWRLAPFAHYSVGVFGGVKFNGGQAAGSATVSFLQVGASLTRR
Ga0066667_104001513	F002633	AGTAGG	LSPVKPEAGPKRVPLANRLAVLLDVFSPWEGISLSYRQFAAALGGGVTEAAIKKWPHREKFPADVARLIVTKAKELGIPDVTLEWVLWGEGSGPQKGTKKVPQQGQQHEHQELADSIAEALRVDLAHNEFGQWSSVEVQRTVIWSLKDLARRLWVLRFPMTETFKLTDEWGTKIGLPSRSLASPTASDDFSAAPNEGR

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