NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10416593

Scaffold Ga0066667_10416593


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10416593 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1090
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000986Metagenome / Metatranscriptome813Y
F008754Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0066667_104165931F008754N/AFSAGKDELDLVAALHALSAQGDTELVSVKDHENTVRVWLDSKNVTA
Ga0066667_104165932F000986AGGAGGMMLLAKAALGLGGPIVLTGAYTMREGVIRVDVDEYRAGGSHVHLWVPAAAVPMAMHFVPSKHMRHASEQAREALPVLHAIVKELKKYPDAEFLEVVDRDQHVRMRTHGGKLQIDVEAPDQKVHVLCPLSAIEDVTSQLEEHAPGA

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