NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190269_10307217

Scaffold Ga0190269_10307217


Overview

Basic Information
Taxon OID3300018465 Open in IMG/M
Scaffold IDGa0190269_10307217 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)33.5944Long. (o)-109.1397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004218Metagenome / Metatranscriptome448Y
F019902Metagenome / Metatranscriptome227Y
F025220Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0190269_103072171F019902N/ASYPREIFMRENVLRDLARQAATEPTFLKQARRDLEGTLARFGYDLTLEELRLVEDLRRRTAAMSDEQLARTLASGLRARTGTPPARPAAPSWRGSGPGRPARPGG
Ga0190269_103072172F004218AGGAVAKTYQLDTMVSPSSLLARAKKAAYANGATLLGDEHSGRFSHEMAKGEYRMVGQKVIVTVTDKHWLLPWPVLEAQLREFVL
Ga0190269_103072173F025220N/AAGGFVVAILGASVNLSAGAVGIGLGVLGYFLGARRLGAASVVLGTAAVFFMAAASTGLIPGVTPPGHGYN

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