NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190268_10001080

Scaffold Ga0190268_10001080


Overview

Basic Information
Taxon OID3300018466 Open in IMG/M
Scaffold IDGa0190268_10001080 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4694
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)33.5944Long. (o)-109.1397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004940Metagenome / Metatranscriptome418Y
F030547Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0190268_100010804F030547GGAGGMSGSRGTGIQSFRFFMWIATALWLIAALAAIIDRDTLNAVAWFGFVAAGALSASGSTERSRGLAYLSIALLVASVGILMGVFLAD
Ga0190268_100010805F004940AGGAGMSEREYLDKGEALRRISEPEGDHELHTTLERMREHHPHLWEVLHRVHLAHDADPSKVEKWRRAPEGSQENIWAEHYDDAMAVLSMGLR

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