Scaffold Ga0190268_10017477

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190268_10017477

Scaffold Ga0190268_10017477

Overview

Basic Information
Taxon OID	3300018466 Open in IMG/M
Scaffold ID	Ga0190268_10017477 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2237
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Arizona
Coordinates	Lat. (^o)	33.5944	Long. (^o)	-109.1397	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004746	Metagenome / Metatranscriptome	425	Y
F023705	Metagenome / Metatranscriptome	209	Y
F033945	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190268_100174771	F023705	AGGCGG	LVGLLDGVKRAGKGRIGTIVRIYGDPDDLAMDVRFEDGSVALYWYDELRRMEGSVQEAG
Ga0190268_100174772	F004746	AGG	LQAYEARRGTVVRVREEHWKSQFAGMRGTVQGLWGQLEHVVVDVLLEDGRRELFWLPDLAVVDEDIAV
Ga0190268_100174773	F033945	GGCGG	MTDEAVLDEIQEYTKEAGLRLRASLSLLHSQGMIDDGDYRELVSCPRSSLAMVEAAYMEARRKG

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