NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190268_10023190

Scaffold Ga0190268_10023190


Overview

Basic Information
Taxon OID3300018466 Open in IMG/M
Scaffold IDGa0190268_10023190 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)33.5944Long. (o)-109.1397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042552Metagenome158N
F072725Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0190268_100231902F042552AGGAGGMQEQREHLLEELRKAQQALTLLKELEPLLTQSKGRELEGHVRALKQLAQSLPEGHIVRLVIESALEPSNVGTVSRARSAIEGEISTLQGALRYGAT
Ga0190268_100231903F072725GGAGGMPVPREDMVQVLRKAEQAQKLLSEVERRLGGGNTELEELLRQLEQLGRTLPEEDSIRLLIESAVGSARTHRSMKAGSEVARSRSTIEGEISSLRGAIQGIDGRADL
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