Scaffold Ga0190268_10076815

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190268_10076815

Scaffold Ga0190268_10076815

Overview

Basic Information
Taxon OID	3300018466 Open in IMG/M
Scaffold ID	Ga0190268_10076815 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1454
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Arizona
Coordinates	Lat. (^o)	33.5944	Long. (^o)	-109.1397	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012065	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190268_100768153	F012065	GAGG	VTEDFDTALRSILSQLVEAQEDQNDADKKLQDYRAANTAPEVPNEFEDVDAFLDYHHSRQSYENQLKQHENALKKAKKEYADAADQLLLFLPDGVPLRYTYEGERSELFGTEYVIGRKRDEIVIESPNRTTT

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