NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10000959

Scaffold Ga0066662_10000959


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10000959 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12915
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002500Metagenome / Metatranscriptome553Y
F007213Metagenome / Metatranscriptome355N
F032967Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_1000095917F032967GGAMMDPYFYRNHLARRYYLDHVNPKHKEFAVWDHKIQLIYGLVALTTAVSALLFFGALDGRFPSVYTSIFETFFVSSFVAVAVFVFFVARGRRRFRELWNQQNGLSANRQPDASRLED
Ga0066662_100009594F007213AGGALRAAMVATFHDTVSYCFRSTLETMGSSVRDVVYDHLRRKGIPESEIPAQFDDVVRVLNESFGGSARVIIYKTLVELYQQYSMRVDFTYQDSLRDHLGLLRERVVVDHIIPRRAQREDPSLEGRLPFVQSFVSSGAR
Ga0066662_100009597F002500GAGGLPITFDDIELSVIAAFIGLAVTLPITYLIVDRIIDNNEKKKLVPVEKLAKERLRSKLGVGFLTTFLITLVIDITSASREKSPIPKDVLMLHIEKLKTAQSDLETLLGVYSNVLDVEIARLTSDVVLQIEHLQEDFEYLAETQPRPPTESHASHMEQVLLKTVHLTKQELIALGTDNTQIRALEDWLTQYTRETRPLPKKEQPIAVRGGHTI
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